MCML researchers with 49 papers in highly-ranked Journals

The influx of deep learning (DL) techniques into the field of survival analysis in recent years has led to substantial methodological progress; for instance, learning from unstructured or high-dimensional data such as images, text or omics data. In this work, we conduct a comprehensive systematic review of DL-based methods for time-to-event analysis, characterizing them according to both survival- and DL-related attributes. In summary, the reviewed methods often address only a small subset of tasks relevant to time-to-event data—e.g., single-risk right-censored data—and neglect to incorporate more complex settings.

Functional data analysis (FDA) is a statistical framework that allows for the analysis of curves, images, or functions on higher dimensional domains. The goals of FDA, such as descriptive analyses, classification, and regression, are generally the same as for statistical analyses of scalar-valued or multivariate data, but FDA brings additional challenges due to the high- and infinite dimensionality of observations and parameters, respectively. This paper provides an introduction to FDA, including a description of the most common statistical analysis techniques, their respective software implementations, and some recent developments in the field. The paper covers fundamental concepts such as descriptives and outliers, smoothing, amplitude and phase variation, and functional principal component analysis. It also discusses functional regression, statistical inference with functional data, functional classification and clustering, and machine learning approaches for functional data analysis. The methods discussed in this paper are widely applicable in fields such as medicine, biophysics, neuroscience, and chemistry, and are increasingly relevant due to the widespread use of technologies that allow for the collection of functional data. Sparse functional data methods are also relevant for longitudinal data analysis. All presented methods are demonstrated using available software in R by analyzing a data set on human motion and motor control. To facilitate the understanding of the methods, their implementation, and hands-on application, the code for these practical examples is made available on Github.

Distributed statistical analyses provide a promising approach for privacy protection when analyzing data distributed over several databases. Instead of directly operating on data, the analyst receives anonymous summary statistics, which are combined into an aggregated result. Further, in discrimination model (prognosis, diagnosis, etc.) development, it is key to evaluate a trained model w.r.t. to its prognostic or predictive performance on new independent data. For binary classification, quantifying discrimination uses the receiver operating characteristics (ROC) and its area under the curve (AUC) as aggregation measure. We are interested to calculate both as well as basic indicators of calibration-in-the-large for a binary classification task using a distributed and privacy-preserving approach…

Little is known about the time-varying determinants of kidney graft failure in children. We performed a retrospective study of primary pediatric kidney transplant recipients (younger than 18 years) from the Eurotransplant registry (1990-2020). Piece-wise exponential additive mixed models were applied to analyze time-varying recipient, donor, and transplant risk factors. Primary outcome was death-censored graft failure.

Objectives: This randomized clinical trial focused on patients with thin peri-implant soft-tissue height (STH) (≤ 2.5 mm) and investigated the impact of an allogenic collagen scaffold (aCS) on supracrestal tissue height and marginal bone loss (MBL).
Material & methods: Forty patients received bone level implants and were randomly assigned to the test group with simultaneous tissue thickening with aCS or the control group. After three months, prosthetic restoration occurred. STH measurements were taken at baseline (T0) and reopening surgery (TR), with MBL assessed at 12 months (T1). Descriptive statistics were calculated for continuous variables, and counts for categorical variables (significance level, p = 0.05).
Results: At T1, 37 patients were available. At T0, control and test groups had mean STH values of 2.3 ± 0.3 mm and 2.1 ± 0.4 mm. TR revealed mean STH values of 2.3 ± 0.2 mm (control) and 2.6 ± 0.7 mm (test), with a significant tissue thickening of 0.5 ± 0.6 mm in the test group (p < 0.03). At T1, control and test groups showed MBL mean values of 1.1 ± 0.8 mm and 1.0 ± 0.6 mm, with a moderate but significant correlation with STH thickening (-0.34), implant position (0.43), history of periodontitis (0.39), and smoking status (0.27).
Conclusion: The use of an aCS protocol resulted in soft tissue thickening but did not reach a threshold to reliably reduce MBL compared to the control group within the study’s limitations.
Clinical relevance: Peri-implant STH is crucial for maintaining peri-implant marginal bone stability. Marginal bone stability represents a crucial factor in prevention of peri-implantitis development.

The incidence of colorectal cancer (CRC), one of the deadliest cancers around the world, is increasing. Tissue microenvironment (TME) features such as tumor-infiltrating lymphocytes (TILs) can have a crucial impact on diagnosis or decision-making for treating patients with CRC. While clinical studies showed that TILs improve the host immune response, leading to a better prognosis, inter-observer agreement for quantifying TILs is not perfect. Incorporating machine learning (ML) based applications in clinical routine may promote diagnosis reliability. Recently, ML has shown potential for making progress in routine clinical procedures. We aim to systematically review the TILs analysis based on ML in CRC histological images. Deep learning (DL) and non-DL techniques can aid pathologists in identifying TILs, and automated TILs are associated with patient outcomes. However, a large multi-institutional CRC dataset with a diverse and multi-ethnic population is necessary to generalize ML methods.

The association between protein intake and the need for mechanical ventilation (MV) is controversial. We aimed to investigate the associations between protein intake and outcomes in ventilated critically ill patients.

We discuss topological aspects of cluster analysis and show that inferring the topological structure of a dataset before clustering it can considerably enhance cluster detection: we show that clustering embedding vectors representing the inherent structure of a dataset instead of the observed feature vectors themselves is highly beneficial. To demonstrate, we combine manifold learning method UMAP for inferring the topological structure with density-based clustering method DBSCAN. Synthetic and real data results show that this both simplifies and improves clustering in a diverse set of low- and high-dimensional problems including clusters of varying density and/or entangled shapes. Our approach simplifies clustering because topological pre-processing consistently reduces parameter sensitivity of DBSCAN. Clustering the resulting embeddings with DBSCAN can then even outperform complex methods such as SPECTACL and ClusterGAN. Finally, our investigation suggests that the crucial issue in clustering does not appear to be the nominal dimension of the data or how many irrelevant features it contains, but rather how separable the clusters are in the ambient observation space they are embedded in, which is usually the (high-dimensional) Euclidean space defined by the features of the data. The approach is successful because it performs the cluster analysis after projecting the data into a more suitable space that is optimized for separability, in some sense.

Beta coefficients for linear regression models represent the ideal form of an interpretable feature effect. However, for non-linear models and especially generalized linear models, the estimated coefficients cannot be interpreted as a direct feature effect on the predicted outcome. Hence, marginal effects are typically used as approximations for feature effects, either in the shape of derivatives of the prediction function or forward differences in prediction due to a change in a feature value. While marginal effects are commonly used in many scientific fields, they have not yet been adopted as a model-agnostic interpretation method for machine learning models. This may stem from their inflexibility as a univariate feature effect and their inability to deal with the non-linearities found in black box models. We introduce a new class of marginal effects termed forward marginal effects. We argue to abandon derivatives in favor of better-interpretable forward differences. Furthermore, we generalize marginal effects based on forward differences to multivariate changes in feature values. To account for the non-linearity of prediction functions, we introduce a non-linearity measure for marginal effects. We argue against summarizing feature effects of a non-linear prediction function in a single metric such as the average marginal effect. Instead, we propose to partition the feature space to compute conditional average marginal effects on feature subspaces, which serve as conditional feature effect estimates.

Hypoglycaemia is one of the most relevant complications of diabetes1 and induces alterations in physiological parameters2, 3 that can be measured with smartwatches and detected using machine learning (ML).4 The performance of these algorithms when applied to different hypoglycaemic ranges or in situations involving cognitive and psychomotor stress remains unclear. Demanding tasks can significantly affect the physiological responses on which the wearable-based hypoglycaemia detection relies.5 The present analysis aimed to investigate ML-based hypoglycaemia detection using wearable data at different levels of hypoglycaemia during a complex task involving cognitive and psychomotor challenges (driving).

The mass loss of glaciers outside the polar ice sheets has been accelerating during the past several decades and has been contributing to global sea-level rise. However, many of the mechanisms of this mass loss process are not well understood, especially the calving dynamics of marine-terminating glaciers, in part due to a lack of high-resolution calving front observations. Svalbard is an ideal site to study the climate sensitivity of glaciers as it is a region that has been undergoing amplified climate variability in both space and time compared to the global mean. Here we present a new high-resolution calving front dataset of 149 marine-terminating glaciers in Svalbard, comprising 124 919 glacier calving front positions during the period 1985–2023 (https://doi.org/10.5281/zenodo.10407266, Li et al., 2023). This dataset was generated using a novel automated deep-learning framework and multiple optical and SAR satellite images from Landsat, Terra-ASTER, Sentinel-2, and Sentinel-1 satellite missions. The overall calving front mapping uncertainty across Svalbard is 31 m. The newly derived calving front dataset agrees well with recent decadal calving front observations between 2000 and 2020 (Kochtitzky and Copland, 2022) and an annual calving front dataset between 2008 and 2022 (Moholdt et al., 2022). The calving fronts between our product and the latter deviate by 32±65m on average. The R2 of the glacier calving front change rates between these two products is 0.98, indicating an excellent match. Using this new calving front dataset, we identified widespread calving front retreats during the past four decades, across most regions in Svalbard except for a handful of glaciers draining the ice caps Vestfonna and Austfonna on Nordaustlandet. In addition, we identified complex patterns of glacier surging events overlaid with seasonal calving cycles. These data and findings provide insights into understanding glacier calving mechanisms and drivers. This new dataset can help improve estimates of glacier frontal ablation as a component of the integrated mass balance of marine-terminating glaciers.

Investors are continuously seeking profitable investment opportunities in startups and, hence, for effective decision-making, need to predict a startup’s probability of success. Nowadays, investors can use not only various fundamental information about a startup (e.g., the age of the startup, the number of founders, and the business sector) but also textual description of a startup’s innovation and business model, which is widely available through online venture capital (VC) platforms such as Crunchbase. To support the decision-making of investors, we develop a machine learning approach with the aim of locating successful startups on VC platforms. Specifically, we develop, train, and evaluate a tailored, fused large language model to predict startup success. Thereby, we assess to what extent self-descriptions on VC platforms are predictive of startup success. Using 20,172 online profiles from Crunchbase, we find that our fused large language model can predict startup success, with textual self-descriptions being responsible for a significant part of the predictive power. Our work provides a decision support tool for investors to find profitable investment opportunities.

Objectives: To assess the quality of simplified radiology reports generated with the large language model (LLM) ChatGPT and to discuss challenges and chances of ChatGPT-like LLMs for medical text simplification.
Methods: In this exploratory case study, a radiologist created three fictitious radiology reports which we simplified by prompting ChatGPT with ‘Explain this medical report to a child using simple language.’’ In a questionnaire, we tasked 15 radiologists to rate the quality of the simplified radiology reports with respect to their factual correctness, completeness, and potential harm for patients. We used Likert scale analysis and inductive free-text categorization to assess the quality of the simplified reports.
Results: Most radiologists agreed that the simplified reports were factually correct, complete, and not potentially harmful to the patient. Nevertheless, instances of incorrect statements, missed relevant medical information, and potentially harmful passages were reported.
Conclusion: While we see a need for further adaption to the medical field, the initial insights of this study indicate a tremendous potential in using LLMs like ChatGPT to improve patient-centered care in radiology and other medical domains.
Clinical relevance statement: Patients have started to use ChatGPT to simplify and explain their medical reports, which is expected to affect patient-doctor interaction. This phenomenon raises several opportunities and challenges for clinical routine.

Background: Stabilisation of the centre of mass (COM) trajectory is thought to be important during running. There is emerging evidence of the importance of leg length and angle regulation during running, which could contribute to stability in the COM trajectory The present study aimed to understand if leg length and angle stabilises the vertical and anterior-posterior (AP) COM displacements, and if the stability alters with running speeds.
Methods: Data for this study came from an open-source treadmill running dataset (n = 28). Leg length (m) was calculated by taking the resultant distance of the two-dimensional sagittal plane leg vector (from pelvis segment to centre of pressure). Leg angle was defined by the angle subtended between the leg vector and the horizontal surface. Leg length and angle were scaled to a standard deviation of one. Uncontrolled manifold analysis (UCM) was used to provide an index of motor abundance (IMA) in the stabilisation of the vertical and AP COM displacement.
Results: IMAAP and IMAvertical were largely destabilising and always stabilising, respectively. As speed increased, the peak destabilising effect on IMAAP increased from −0.66(0.18) at 2.5 m/s to −1.12(0.18) at 4.5 m/s, and the peak stabilising effect on IMAvertical increased from 0.69 (0.19) at 2.5 m/s to 1.18 (0.18) at 4.5 m/s.
Conclusion: Two simple parameters from a simple spring-mass model, leg length and angle, can explain the control behind running. The variability in leg length and angle helped stabilise the vertical COM, whilst maintaining constant running speed may rely more on inter-limb variation to adjust the horizontal COM accelerations.

We present the technologies and host components developed to power a speech-based dialogue manager with affective capabilities. The overall goal is that the system adapts its response to the sentiment and arousal level of the user inferred by analysing the linguistic and paralinguistic information embedded in his or her interaction. A linguistic-based, dedicated sentiment analysis component determines the body of the system response. A paralinguistic-based, dedicated arousal recognition component adjusts the energy level to convey in the affective system response. The sentiment analysis model is trained using the CMU-MOSEI dataset and implements a hierarchical contextual attention fusion network, which scores an Unweighted Average Recall (UAR) of 79.04% on the test set when tackling the task as a binary classification problem. The arousal recognition model is trained using the MSP-Podcast corpus. This model extracts the Mel-spectrogram representations of the speech signals, which are exploited with a Convolutional Neural Network (CNN) trained from scratch, and scores a UAR of 61.11% on the test set when tackling the task as a three-class classification problem. Furthermore, we highlight two sample dialogues implemented at the system back-end to detail how the sentiment and arousal inferences are coupled to determine the affective system response. These are also showcased in a proof of concept demonstrator. We publicly release the trained models to provide the research community with off-the-shelf sentiment analysis and arousal recognition tools.

The quantification of predictive uncertainties helps to understand where the existing models struggle to find the correct prediction. A useful quality control tool is the task of detecting out-of-distribution (OOD) data by examining the model’s predictive uncertainty. For this task, deterministic single forward pass frameworks have recently been established as deep learning models and have shown competitive performance in certain tasks. The unique combination of spectrally normalized weight matrices and residual connection networks with an approximate Gaussian process (GP) output layer can here offer the best trade-off between performance and complexity. We utilize this framework with a refined version that adds spectral batch normalization and an inducing points approximation of the GP for the task of OOD detection in remote sensing image classification. This is an important task in the field of remote sensing, because it provides an evaluation of how reliable the model’s predictive uncertainty estimates are. By performing experiments on the benchmark datasets Eurosat and So2Sat LCZ42, we can show the effectiveness of the proposed adaptions to the residual networks (ResNets). Depending on the chosen dataset, the proposed methodology achieves OOD detection performance up to 16% higher than previously considered distance-aware networks. Compared with other uncertainty quantification methodologies, the results are on the same level and exceed them in certain experiments by up to 2%. In particular, spectral batch normalization, which normalizes the batched data as opposed to normalizing the network weights by the spectral normalization (SN), plays a crucial role and leads to performance gains of up to 3% in every single experiment.

The Internet of Things (IoT)-based passive acoustic monitoring (PAM) has shown great potential in large-scale remote bird monitoring. However, field recordings often contain overlapping signals, making precise bird information extraction challenging. To solve this challenge, first, the interchannel spatial feature is chosen as complementary information to the spectral feature to obtain additional spatial correlations between the sources. Then, an end-to-end model named BACPPNet is built based on Deeplabv3plus and enhanced with the polarized self-attention mechanism to estimate the spectral magnitude mask (SMM) for separating bird vocalizations. Finally, the separated bird vocalizations are recovered from SMMs and the spectrogram of mixed audio using the inverse short Fourier transform (ISTFT). We evaluate our proposed method utilizing the generated mixed data set. Experiments have shown that our method can separate bird vocalizations from mixed audio with root mean square error (RMSE), source-to-distortion ratio (SDR), source-to-interference ratio (SIR), source-to-artifact ratio (SAR), and short-time objective intelligibility (STOI) values of 2.82, 10.00 dB, 29.90 dB, 11.08 dB, and 0.66, respectively, which are better than existing methods. Furthermore, the average classification accuracy of the separated bird vocalizations drops the least. This indicates that our method outperforms other compared separation methods in bird sound separation and preserves the fidelity of the separated sound sources, which might help us better understand wild bird sound recordings.

Ubiquitous sensing has been widely applied in smart healthcare, providing an opportunity for intelligent heart sound auscultation. However, smart devices contain sensitive information, raising user privacy concerns. To this end, federated learning (FL) has been adopted as an effective solution, enabling decentralised learning without data sharing, thus preserving data privacy in the Internet of Health Things (IoHT). Nevertheless, traditional FL requires the same architectural models to be trained across local clients and global servers, leading to a lack of model heterogeneity and client personalisation. For medical institutions with private data clients, this study proposes Fed-MStacking, a heterogeneous FL framework that incorporates a stacking ensemble learning strategy to support clients in building their own models. The secondary objective of this study is to address scenarios involving local clients with data characterised by inconsistent labelling. Specifically, the local client contains only one case type, and the data cannot be shared within or outside the institution. To train a global multi-class classifier, we aggregate missing class information from all clients at each institution and build meta-data, which then participates in FL training via a meta-learner. We apply the proposed framework to a multi-institutional heart sound database. The experiments utilise random forests (RFs), feedforward neural networks (FNNs), and convolutional neural networks (CNNs) as base classifiers. The results show that the heterogeneous stacking of local models performs better compared to homogeneous stacking.

Exploiting machine learning techniques to automatically classify multispectral remote sensing imagery plays a significant role in deriving changes on the Earth’s surface. However, the computation power required to manage large Earth observation data and apply sophisticated machine learning models for this analysis purpose has become an intractable bottleneck. Leveraging quantum computing provides a possibility to tackle this challenge in the future. This article focuses on land cover classification by analyzing Sentinel-2 images with quantum computing. Two hybrid quantum-classical deep learning frameworks are proposed. Both models exploit quantum computing to extract features efficiently from multispectral images and classical computing for final classification. As proof of concept, numerical simulation results on the LCZ42 dataset through the TensorFlow Quantum platform verify our models’ validity. The experiments indicate that our models can extract features more effectively compared with their classical counterparts, specifically, the convolutional neural network (CNN) model. Our models demonstrated improvements, with an average test accuracy increase of 4.5% and 3.3%, respectively, in comparison to the CNN model. In addition, our proposed models exhibit better transferability and robustness than CNN models.

Objective: Early diagnosis of cardiovascular diseases is a crucial task in medical practice. With the application of computer audition in the healthcare field, artificial intelligence (AI) has been applied to clinical non-invasive intelligent auscultation of heart sounds to provide rapid and effective pre-screening. However, AI models generally require large amounts of data which may cause privacy issues. Unfortunately, it is difficult to collect large amounts of healthcare data from a single centre. Methods: In this study, we propose federated learning (FL) optimisation strategies for the practical application in multi-centre institutional heart sound databases. The horizontal FL is mainly employed to tackle the privacy problem by aligning the feature spaces of FL participating institutions without information leakage. In addition, techniques based on deep learning have poor interpretability due to their “black-box” property, which limits the feasibility of AI in real medical data. To this end, vertical FL is utilised to address the issues of model interpretability and data scarcity. Conclusion: Experimental results demonstrate that, the proposed FL framework can achieve good performance for heart sound abnormality detection by taking the personal privacy protection into account. Moreover, using the federated feature space is beneficial to balance the interpretability of the vertical FL and the privacy of the data. Significance: This work realises the potential of FL from research to clinical practice, and is expected to have extensive application in the federated smart medical system.

As the array dimension of massive MIMO systems increases to unprecedented levels, two problems occur. First, the spatial stationarity assumption along the antenna elements is no longer valid. Second, the large array size results in an unacceptably high power consumption if high-resolution analog-to-digital converters are used. To address these two challenges, we consider a Bussgang linear minimum mean square error (BLMMSE)-based channel estimator for large scale massive MIMO systems with one-bit quantizers and a spatially non-stationary channel. Whereas other works usually assume that the channel covariance is known at the base station, we consider a plug-in BLMMSE estimator that uses an estimate of the channel covariance and rigorously analyze the distortion produced by using an estimated, rather than the true, covariance. To cope with the spatial non-stationarity, we introduce dithering into the quantized signals and provide a theoretical error analysis. In addition, we propose an angular domain fitting procedure which is based on solving an instance of non-negative least squares. For the multi-user data transmission phase, we further propose a BLMMSE-based receiver to handle one-bit quantized data signals. Our numerical results show that the performance of the proposed BLMMSE channel estimator is very close to the oracle-aided scheme with ideal knowledge of the channel covariance matrix. The BLMMSE receiver outperforms the conventional maximum-ratio-combining and zero-forcing receivers in terms of the resulting ergodic sum rate.

Deep neural networks based on unrolled iterative algorithms have achieved remarkable success in sparse reconstruction applications, such as synthetic aperture radar (SAR) tomographic inversion (TomoSAR). However, the currently available deep learning-based TomoSAR algorithms are limited to 3-D reconstruction. The extension of deep learning-based algorithms to 4-D imaging, i.e., differential TomoSAR (D-TomoSAR) applications, is impeded mainly due to the high-dimensional weight matrices required by the network designed for D-TomoSAR inversion, which typically contain millions of freely trainable parameters. Learning such huge number of weights requires an enormous number of training samples, resulting in a large memory burden and excessive time consumption. To tackle this issue, we propose an efficient and accurate algorithm called HyperLISTA-ABT. The weights in HyperLISTA-ABT are determined in an analytical way according to a minimum coherence criterion, trimming the model down to an ultra-light one with only three hyperparameters. Additionally, HyperLISTA-ABT improves the global thresholding by utilizing an adaptive blockwise thresholding (ABT) scheme, which applies block-coordinate techniques and conducts thresholding in local blocks, so that weak expressions and local features can be retained in the shrinkage step layer by layer. Simulations were performed and demonstrated the effectiveness of our approach, showing that HyperLISTA-ABT achieves superior computational efficiency with no significant performance degradation compared to the state-of-the-art methods. Real data experiments showed that a high-quality 4-D point cloud could be reconstructed over a large area by the proposed HyperLISTA-ABT with affordable computational resources and in a fast time.

In this article, we propose a multimodal co-learning framework for building change detection. This framework can be adopted to jointly train a Siamese bitemporal image network and a height difference (HDiff) network with labeled source data and unlabeled target data pairs. Three co-learning combinations (vanilla co-learning, fusion co-learning, and detached fusion co-learning) are proposed and investigated with two types of co-learning loss functions within our framework. Our experimental results demonstrate that the proposed methods are able to take advantage of unlabeled target data pairs and, therefore, enhance the performance of single-modal neural networks on the target data. In addition, our synthetic-to-real experiments demonstrate that the recently published synthetic dataset, Simulated Multimodal Aerial Remote Sensing (SMARS), is feasible to be used in real change detection scenarios, where the optimal result is with the F1 score of 79.29%.

Object detection (OD) is an essential and fundamental task in computer vision (CV) and satellite image processing. Existing deep learning methods have achieved impressive performance thanks to the availability of large-scale annotated datasets. Yet, in real-world applications, the availability of labels is limited. In this article, few-shot OD (FSOD) has emerged as a promising direction, which aims at enabling the model to detect novel objects with only few of them annotated. However, many existing FSOD algorithms overlook a critical issue: when an input image contains multiple novel objects and only a subset of them are annotated, the unlabeled objects will be considered as background during training. This can cause confusions and severely impact the model’s ability to recall novel objects. To address this issue, we propose a self-training-based FSOD (ST-FSOD) approach, which incorporates the self-training mechanism into the few-shot fine-tuning process. ST-FSOD aims to enable the discovery of novel objects that are not annotated and take them into account during training. On the one hand, we devise a two-branch region proposal networks (RPNs) to separate the proposal extraction of base and novel objects. On the another hand, we incorporate the student-teacher mechanism into RPN and the region-of-interest (RoI) head to include those highly confident yet unlabeled targets as pseudolabels. Experimental results demonstrate that our proposed method outperforms the state of the art in various FSOD settings by a large margin.

Monocular height estimation (MHE) is key for generating 3-D city models, essential for swift disaster response. Moving beyond the traditional focus on performance enhancement, our study breaks new ground by probing the interpretability of MHE networks. We have pioneeringly discovered that neurons within MHE models demonstrate selectivity for both height and semantic classes. This insight sheds light on the complex inner workings of MHE models and inspires innovative strategies for leveraging elevation data more effectively. Informed by this insight, we propose a pioneering framework that employs MHE as a self-supervised pretraining method for remote sensing (RS) imagery. This approach significantly enhances the performance of semantic segmentation tasks. Furthermore, we develop a disentangled latent transformer (DLT) module that leverages explainable deep representations from pretrained MHE networks for unsupervised semantic segmentation. Our method demonstrates the significant potential of MHE tasks in developing foundation models for sophisticated pixel-level semantic analyses. Additionally, we present a new dataset designed to benchmark the performance of both semantic segmentation and height estimation tasks.

Change detection (CD) from remote sensing (RS) images using deep learning has been widely investigated in the literature. It is typically regarded as a pixelwise labeling task that aims to classify each pixel as changed or unchanged. Although per-pixel classification networks in encoder-decoder structures have shown dominance, they still suffer from imprecise boundaries and incomplete object delineation at various scenes. For high-resolution RS images, partly or totally changed objects are more worthy of attention rather than a single pixel. Therefore, we revisit the CD task from the mask prediction and classification perspective and propose mask classification-based CD (MaskCD) to detect changed areas by adaptively generating categorized masks from input image pairs. Specifically, it utilizes a cross-level change representation perceiver (CLCRP) to learn multiscale change-aware representations and capture spatiotemporal relations from encoded features by exploiting deformable multihead self-attention (DeformMHSA). Subsequently, a masked cross-attention-based detection transformers (MCA-DETRs) decoder is developed to accurately locate and identify changed objects based on masked cross-attention and self-attention (SA) mechanisms. It reconstructs the desired changed objects by decoding the pixelwise representations into learnable mask proposals and making final predictions from these candidates. Experimental results on five benchmark datasets demonstrate the proposed approach outperforms other state-of-the-art models.

In the remote sensing community, extracting buildings from remote sensing imagery has triggered great interest. While many studies have been conducted, a comprehensive review of these approaches that are applied to optical and synthetic aperture radar (SAR) imagery is still lacking. Therefore, we provide an in-depth review of both early efforts and recent advances, which are aimed at extracting geometrical structures or semantic attributes of buildings, including building footprint generation, building facade segmentation, roof segment and superstructure segmentation, building height retrieval, building-type classification, building change detection, and annotation data correction. Furthermore, a list of corresponding benchmark datasets is given. Finally, challenges and outlooks of existing approaches as well as promising applications are discussed to enhance comprehension within this realm of research.

Localizing desired objects from remote sensing images is of great use in practical applications. Referring image segmentation, which aims at segmenting out the objects to which a given expression refers, has been extensively studied in natural images. However, almost no research attention is given to this task of remote sensing imagery. Considering its potential for real-world applications, in this article, we introduce referring remote sensing image segmentation (RRSIS) to fill in this gap and make some insightful explorations. Specifically, we created a new dataset, called RefSegRS, for this task, enabling us to evaluate different methods. Afterward, we benchmark referring image segmentation methods of natural images on the RefSegRS dataset and find that these models show limited efficacy in detecting small and scattered objects. To alleviate this issue, we propose a language-guided cross-scale enhancement (LGCE) module that utilizes linguistic features to adaptively enhance multiscale visual features by integrating both deep and shallow features. The proposed dataset, benchmarking results, and the designed LGCE module provide insights into the design of a better RRSIS model.

Self-supervised pretraining on large-scale satellite data has raised great interest in building Earth observation (EO) foundation models. However, many important resources beyond pure satellite imagery, such as land-cover-land-use products that provide free global semantic information, as well as vision foundation models that hold strong knowledge of the natural world, are not widely studied. In this work, we show these free additional resources not only help resolve common contrastive learning bottlenecks but also significantly boost the efficiency and effectiveness of EO pretraining. Specifically, we first propose soft contrastive learning (SoftCon) that optimizes cross-scene soft similarity based on land-cover-generated multilabel supervision, naturally solving the issue of multiple positive samples and too strict positive matching in complex scenes. Second, we revisit and explore cross-domain continual pretraining for both multispectral and synthetic aperture radar (SAR) imagery, building efficient EO foundation models from strongest vision models such as DINOv2. Adapting simple weight-initialization and Siamese masking strategies into our SoftCon framework, we demonstrate impressive continual pretraining performance even when the input modalities are not aligned. Without prohibitive training, we produce multispectral and SAR foundation models that achieve significantly better results in 10 out of 11 downstream tasks than most existing SOTA models. For example, our ResNet50/ViT-S achieve 84.8/85.0 linear probing mAP scores on BigEarthNet-10%, which are better than most existing ViT-L models; under the same setting, our ViT-B sets a new record of 86.8 in multispectral, and 82.5 in SAR, the latter even better than many multispectral models.

Optimization problems are a staple of today’s scientific and technical landscape. However, at present, solvers of such problems are almost exclusively run on digital hardware. Using Turing machines as a mathematical model for any type of digital hardware, in this paper, we analyze fundamental limitations of this conceptual approach of solving optimization problems. Since in most applications, the optimizer itself is of significantly more interest than the optimal value of the corresponding function, we will focus on computability of the optimizer. In fact, we will show that in various situations the optimizer is unattainable on Turing machines and consequently on digital computers. Moreover, even worse, there does not exist a Turing machine, which approximates the optimizer itself up to a certain constant error. We prove such results for a variety of well-known problems from very different areas, including artificial intelligence, financial mathematics, and information theory, often deriving the even stronger result that such problems are not Banach-Mazur computable, also not even in an approximate sense.

Images and videos are widely used to elicit emotions; however, their visual appeal differs from real-world experiences. With virtual reality becoming more realistic, immersive, and interactive, we envision virtual environments to elicit emotions effectively, rapidly, and with high ecological validity. This work presents the first interactive virtual reality dataset to elicit emotions. We created five interactive virtual environments based on corresponding validated 360° videos and validated their effectiveness with 160 participants. Our results show that our virtual environments successfully elicit targeted emotions. Compared with the existing methods using images or videos, our dataset allows virtual reality researchers and practitioners to integrate their designs effectively with emotion elicitation settings in an immersive and interactive way.

In this paper, we formalize the problem of learning coherent collections of decision models, which we call decision catalogues, and illustrate it for the case where models are scoring systems. This problem is motivated by the recent rise of algorithmic decision-making and the idea to improve human decision-making through machine learning, in conjunction with the observation that decision models should be situated in terms of their complexity and resource requirements: Instead of constructing a single decision model and using this model in all cases, different models might be appropriate depending on the decision context. Decision catalogues are supposed to support a seamless transition from very simple, resource-efficient to more sophisticated but also more demanding models. We present a general algorithmic framework for inducing such catalogues from training data, which tackles the learning task as a problem of searching the space of candidate catalogues systematically and, to this end, makes use of heuristic search methods. We also present a concrete instantiation of this framework as well as empirical studies for performance evaluation, which, in a nutshell, show that greedy search is an efficient and hard-to-beat strategy for the construction of catalogues of scoring systems.

Background: Radiological age assessment using reference studies is inherently limited in accuracy due to a finite number of assignable skeletal maturation stages. To overcome this limitation, we present a deep learning approach for continuous age assessment based on clavicle ossification in computed tomography (CT).
Methods: Thoracic CT scans were retrospectively collected from the picture archiving and communication system. Individuals aged 15.0 to 30.0 years examined in routine clinical practice were included. All scans were automatically cropped around the medial clavicular epiphyseal cartilages. A deep learning model was trained to predict a person’s chronological age based on these scans. Performance was evaluated using mean absolute error (MAE). Model performance was compared to an optimistic human reader performance estimate for an established reference study method.
Results: The deep learning model was trained on 4,400 scans of 1,935 patients (training set: mean age =
24.2 years ± 4.0, 1132 female) and evaluated on 300 scans of 300 patients with a balanced age and sex distribution (test set: mean age = 22.5 years ± 4.4, 150 female). Model MAE was 1.65 years, and the highest absolute error was 6.40 years for females and 7.32 years for males. However, performance could be attributed to norm-variants or pathologic disorders. Human reader estimate MAE was 1.84 years and the highest absolute error was 3.40 years for females and 3.78 years for males.
Conclusions: We present a deep learning approach for continuous age predictions using CT volumes highlighting the medial clavicular epiphyseal cartilage with performance comparable to the human reader estimate.

Urban development in South America has experienced significant growth and transformation over the past few decades. South America’s urban development and trees are closely interconnected, and tree cover within cities plays a vital role in shaping sustainable and resilient urban landscapes. However, knowledge of urban tree canopy (UTC) coverage in the South American continent remains limited. In this study, we used high-resolution satellite images and developed a semi-supervised deep learning method to create UTC data for 888 South American cities. The proposed semi-supervised method can leverage both labeled and unlabeled data during training. By incorporating labeled data for guidance and utilizing unlabeled data to explore underlying patterns, the algorithm enhances model robustness and generalization for urban tree canopy detection across South America, with an average overall accuracy of 94.88% for the tested cities. Based on the created UTC products, we successfully assessed the UTC coverage for each city. Statistical results showed that the UTC coverage in South America is between 0.76% and 69.53%, and the average UTC coverage is approximately 19.99%. Among the 888 cities, only 357 cities that accommodate approximately 48.25% of the total population have UTC coverage greater than 20%, while the remaining 531 cities that accommodate approximately 51.75% of the total population have UTC coverage less than 20%. Natural factors (climatic and geographical) play a very important role in determining UTC coverage, followed by human activity factors (economy and urbanization level). We expect that the findings of this study and the created UTC dataset will help formulate policies and strategies to promote sustainable urban forestry, thus further improving the quality of life of residents in South America.

The field of automated machine learning (AutoML) introduces techniques that automate parts of the development of machine learning (ML) systems, accelerating the process and reducing barriers for novices. However, decisions derived from ML models can reproduce, amplify, or even introduce unfairness in our societies, causing harm to (groups of) individuals. In response, researchers have started to propose AutoML systems that jointly optimize fairness and predictive performance to mitigate fairness-related harm. However, fairness is a complex and inherently interdisciplinary subject, and solely posing it as an optimization problem can have adverse side effects. With this work, we aim to raise awareness among developers of AutoML systems about such limitations of fairness-aware AutoML, while also calling attention to the potential of AutoML as a tool for fairness research. We present a comprehensive overview of different ways in which fairness-related harm can arise and the ensuing implications for the design of fairness-aware AutoML. We conclude that while fairness cannot be automated, fairness-aware AutoML can play an important role in the toolbox of ML practitioners. We highlight several open technical challenges for future work in this direction. Additionally, we advocate for the creation of more user-centered assistive systems designed to tackle challenges encountered in fairness work.

Building prediction models using biomechanical features is challenging because such models may require large sample sizes. However, collecting biomechanical data on large sample sizes is logistically very challenging. This study aims to investigate if modern machine learning algorithms can help overcome the issue of limited sample sizes on developing prediction models. This was a secondary data analysis two biomechanical datasets – a walking dataset on 2295 participants, and a countermovement jump dataset on 31 participants. The input features were the three-dimensional ground reaction forces (GRFs) of the lower limbs. The outcome was the orthopaedic disease category (healthy, calcaneus, ankle, knee, hip) in the walking dataset, and healthy vs people with patellofemoral pain syndrome in the jump dataset. Different algorithms were compared: multinomial/LASSO regression, XGBoost, various deep learning time-series algorithms with augmented data, and with transfer learning. For the outcome of weighted multiclass area under the receiver operating curve (AUC) in the walking dataset, the three models with the best performance were InceptionTime with x12 augmented data (0.810), XGBoost (0.804), and multinomial logistic regression (0.800). For the jump dataset, the top three models with the highest AUC were the LASSO (1.00), InceptionTime with x8 augmentation (0.750), and transfer learning (0.653). Machine-learning based strategies for managing the challenging issue of limited sample size for biomechanical ML-based problems, could benefit the development of alternative prediction models in healthcare, especially when time-series data are involved.

Comparing different AutoML frameworks is notoriously challenging and often done incorrectly. We introduce an open and extensible benchmark that follows best practices and avoids common mistakes when comparing AutoML frameworks. We conduct a thorough comparison of 9 well-known AutoML frameworks across 71 classification and 33 regression tasks. The differences between the AutoML frameworks are explored with a multi-faceted analysis, evaluating model accuracy, its trade-offs with inference time, and framework failures. We also use Bradley-Terry trees to discover subsets of tasks where the relative AutoML framework rankings differ. The benchmark comes with an open-source tool that integrates with many AutoML frameworks and automates the empirical evaluation process end-to-end: from framework installation and resource allocation to in-depth evaluation. The benchmark uses public data sets, can be easily extended with other AutoML frameworks and tasks, and has a website with up-to-date results.

Contemporary empirical applications frequently require flexible regression models for complex response types and large tabular or non-tabular, including image or text, data. Classical regression models either break down under the computational load of processing such data or require additional manual feature extraction to make these problems tractable. Here, we present deeptrafo, a package for fitting flexible regression models for conditional distributions using a tensorflow backend with numerous additional processors, such as neural networks, penalties, and smoothing splines. Package deeptrafo implements deep conditional transformation models (DCTMs) for binary, ordinal, count, survival, continuous, and time series responses, potentially with uninformative censoring. Unlike other available methods, DCTMs do not assume a parametric family of distributions for the response. Further, the data analyst may trade off interpretability and flexibility by supplying custom neural network architectures and smoothers for each term in an intuitive formula interface. We demonstrate how to set up, fit, and work with DCTMs for several response types. We further showcase how to construct ensembles of these models, evaluate models using inbuilt cross-validation, and use other convenience functions for DCTMs in several applications. Lastly, we discuss DCTMs in light of other approaches to regression with non-tabular data.

The localization of objects is essential in many applications, such as robotics, virtual and augmented reality, and warehouse logistics. Recent advancements in deep learning have enabled localization using monocular cameras. Traditionally, structure from motion (SfM) techniques predict an object’s absolute position from a point cloud, while absolute pose regression (APR) methods use neural networks to understand the environment semantically. However, both approaches face challenges from environmental factors like motion blur, lighting changes, repetitive patterns, and featureless areas. This study addresses these challenges by incorporating additional information and refining absolute pose estimates with relative pose regression (RPR) methods. RPR also struggles with issues like motion blur. To overcome this, we compute the optical flow between consecutive images using the Lucas–Kanade algorithm and use a small recurrent convolutional network to predict relative poses. Combining absolute and relative poses is difficult due to differences between global and local coordinate systems. Current methods use pose graph optimization (PGO) to align these poses. In this work, we propose recurrent fusion networks to better integrate absolute and relative pose predictions, enhancing the accuracy of absolute pose estimates. We evaluate eight different recurrent units and create a simulation environment to pre-train the APR and RPR networks for improved generalization. Additionally, we record a large dataset of various scenarios in a challenging indoor environment resembling a warehouse with transportation robots. Through hyperparameter searches and experiments, we demonstrate that our recurrent fusion method outperforms PGO in effectiveness.

Trees in urban areas act as carbon sinks and provide ecosystem services for residents. However, the impact of urbanization on tree coverage in South America remains poorly understood. Here, we make use of very high resolution satellite imagery to derive urban tree coverage for 882 cities in South America and developed a tree coverage impacted (TCI) coefficient to quantify the direct and indirect impacts of urbanization on urban tree canopy (UTC) coverage. The direct effect refers to the change in tree cover due to the rise in urban intensity compared to scenarios with extremely low levels of urbanization, while the indirect impact refers to the change in tree coverage resulting from human management practices and alterations in urban environments. Our study revealed the negative direct impacts and prevalent positive indirect impacts of urbanization on UTC coverage. In South America, 841 cities exhibit positive indirect impacts, while only 41 cities show negative indirect impacts. The prevalent positive indirect effects can offset approximately 48% of the direct loss of tree coverage due to increased urban intensity, with full offsets achieved in Argentinian and arid regions of South America. In addition, human activity factors play the most important role in determining the indirect effects of urbanization on UTC coverage, followed by climatic and geographic factors. These findings will help us understand the impact of urbanization on UTC coverage along the urban intensity gradient and formulate policies and strategies to promote sustainable urban development in South America.

The reconstruction of cortical surfaces is a prerequisite for quantitative analyses of the cerebral cortex in magnetic resonance imaging (MRI). Existing segmentation-based methods separate the surface registration from the surface extraction, which is computationally inefficient and prone to distortions. We introduce Vox2Cortex-Flow (V2C-Flow), a deep mesh-deformation technique that learns a deformation field from a brain template to the cortical surfaces of an MRI scan. To this end, we present a geometric neural network that models the deformation-describing ordinary differential equation in a continuous manner. The network architecture comprises convolutional and graph-convolutional layers, which allows it to work with images and meshes at the same time. V2C-Flow is not only very fast, requiring less than two seconds to infer all four cortical surfaces, but also establishes vertex-wise correspondences to the template during reconstruction. In addition, V2C-Flow is the first approach for cortex reconstruction that models white matter and pial surfaces jointly, therefore avoiding intersections between them. Our comprehensive experiments on internal and external test data demonstrate that V2C-Flow results in cortical surfaces that are state-of-the-art in terms of accuracy. Moreover, we show that the established correspondences are more consistent than in FreeSurfer and that they can directly be utilized for cortex parcellation and group analyses of cortical thickness.

Causal machine learning (ML) offers flexible, data-driven methods for predicting treatment outcomes including efficacy and toxicity, thereby supporting the assessment and safety of drugs. A key benefit of causal ML is that it allows for estimating individualized treatment effects, so that clinical decision-making can be personalized to individual patient profiles. Causal ML can be used in combination with both clinical trial data and real-world data, such as clinical registries and electronic health records, but caution is needed to avoid biased or incorrect predictions. In this Perspective, we discuss the benefits of causal ML (relative to traditional statistical or ML approaches) and outline the key components and steps. Finally, we provide recommendations for the reliable use of causal ML and effective translation into the clinic.

Traditional deep learning approaches for prediction of future trajectory of multiple road agents rely on knowing information about their past trajectory. In contrast, this work utilizes information of only the current state and intended direction to predict the future trajectory of multiple vehicles at intersections. Incorporating intention information has two distinct advantages: (1) It allows to not just predict the future trajectory but also control the multiple vehicles. (2) By manipulating the intention, the interaction among the vehicles is adapted accordingly to achieve desired behavior. Both these advantages would otherwise not be possible using only past trajectory information Our model utilizes message passing of information between the vehicle nodes for a more holistic overview of the environment, resulting in better trajectory prediction and control of the vehicles. This work also provides a thorough investigation and discussion into the disparity between offline and online metrics for the task of multi-agent control. We particularly show why conducting only offline evaluation would not suffice, thereby necessitating online evaluation. We demonstrate the superiority of utilizing intention information rather than past trajectory in online scenarios. Lastly, we show the capability of our method in adapting to different domains through experiments conducted on two distinct simulation platforms i.e. SUMO and CARLA.

Objective. This study aimed to develop convolutional neural networks (CNNs) models to predict the energy expenditure (EE) of children from raw accelerometer data. Additionally, this study sought to external validation of the CNN models in addition to the linear regression (LM), random forest (RF), and full connected neural network (FcNN) models published in Steenbock et al (2019 J. Meas. Phys. Behav. 2 94–102). Approach. Included in this study were 41 German children (3.0–6.99 years) for the training and internal validation who were equipped with GENEActiv, GT3X+, and activPAL accelerometers. The external validation dataset consisted of 39 Canadian children (3.0–5.99 years) that were equipped with OPAL, GT9X, GENEActiv, and GT3X+ accelerometers. EE was recorded simultaneously in both datasets using a portable metabolic unit. The protocols consisted of a semi-structured activities ranging from low to high intensities. The root mean square error (RMSE) values were calculated and used to evaluate model performances. Main results. (1) The CNNs outperformed the LM (13.17%–23.81% lower mean RMSE values), FcNN (8.13%–27.27% lower RMSE values) and the RF models (3.59%–18.84% lower RMSE values) in the internal dataset. (2) In contrast, it was found that when applied to the external Canadian dataset, the CNN models had consistently higher RMSE values compared to the LM, FcNN, and RF. Significance. Although CNNs can enhance EE prediction accuracy, their ability to generalize to new datasets and accelerometer brands/models, is more limited compared to LM, RF, and FcNN models.

Throughout their education and when reading the scientific literature, students may get the impression that there is a unique and correct analysis strategy for every data analysis task and that this analysis strategy will always yield a significant and noteworthy result. This expectation conflicts with a growing realization that there is a multiplicity of possible analysis strategies in empirical research, which will lead to overoptimism and nonreplicable research findings if it is combined with result-dependent selective reporting. Here, we argue that students are often ill-equipped for real-world data analysis tasks and unprepared for the dangers of selectively reporting the most promising results. We present a seminar course intended for advanced undergraduates and beginning graduate students of data analysis fields such as statistics, data science, or bioinformatics that aims to increase the awareness of uncertain choices in the analysis of empirical data and present ways to deal with these choices through theoretical modules and practical hands-on sessions.

Radiation-induced pneumonitis (RP), diagnosed 6–12 weeks after treatment, is a complication of lung tumor radiotherapy. So far, clinical and dosimetric parameters have not been reliable in predicting RP. We propose using non-contrast enhanced magnetic resonance imaging (MRI) based functional parameters acquired over the treatment course for patient stratification for improved follow-up.

In this paper we study consensus-based optimization (CBO), which is a multiagent metaheuristic derivative-free optimization method that can globally minimize nonconvex nonsmooth functions and is amenable to theoretical analysis. Based on an experimentally supported intuition that, on average, CBO performs a gradient descent of the squared Euclidean distance to the global minimizer, we devise a novel technique for proving the convergence to the global minimizer in mean-field law for a rich class of objective functions. The result unveils internal mechanisms of CBO that are responsible for the success of the method. In particular, we prove that CBO performs a convexification of a large class of optimization problems as the number of optimizing agents goes to infinity. Furthermore, we improve prior analyses by requiring mild assumptions about the initialization of the method and by covering objectives that are merely locally Lipschitz continuous. As a core component of this analysis, we establish a quantitative nonasymptotic Laplace principle, which may be of independent interest. From the result of CBO convergence in mean-field law, it becomes apparent that the hardness of any global optimization problem is necessarily encoded in the rate of the mean-field approximation, for which we provide a novel probabilistic quantitative estimate. The combination of these results allows us to obtain probabilistic global convergence guarantees of the numerical CBO method.

The estimation of heterogeneous treatment effects has attracted considerable interest in many disciplines, most prominently in medicine and economics. Contemporary research has so far primarily focused on continuous and binary responses where heterogeneous treatment effects are traditionally estimated by a linear model, which allows the estimation of constant or heterogeneous effects even under certain model misspecifications. More complex models for survival, count, or ordinal outcomes require stricter assumptions to reliably estimate the treatment effect. Most importantly, the noncollapsibility issue necessitates the joint estimation of treatment and prognostic effects. Model-based forests allow simultaneous estimation of covariate-dependent treatment and prognostic effects, but only for randomized trials. In this paper, we propose modifications to model-based forests to address the confounding issue in observational data. In particular, we evaluate an orthogonalization strategy originally proposed by Robinson (1988, Econometrica) in the context of model-based forests targeting heterogeneous treatment effect estimation in generalized linear models and transformation models. We found that this strategy reduces confounding effects in a simulated study with various outcome distributions. We demonstrate the practical aspects of heterogeneous treatment effect estimation for survival and ordinal outcomes by an assessment of the potentially heterogeneous effect of Riluzole on the progress of Amyotrophic Lateral Sclerosis.

Various privacy-preserving frameworks that respect the individual’s privacy in the analysis of data have been developed in recent years. However, available model classes such as simple statistics or generalized linear models lack the flexibility required for a good approximation of the underlying data-generating process in practice. In this paper, we propose an algorithm for a distributed, privacy-preserving, and lossless estimation of generalized additive mixed models (GAMM) using component-wise gradient boosting (CWB). Making use of CWB allows us to reframe the GAMM estimation as a distributed fitting of base learners using the $L_2$-loss. In order to account for the heterogeneity of different data location sites, we propose a distributed version of a row-wise tensor product that allows the computation of site-specific (smooth) effects. Our adaption of CWB preserves all the important properties of the original algorithm, such as an unbiased feature selection and the feasibility to fit models in high-dimensional feature spaces, and yields equivalent model estimates as CWB on pooled data. Next to a derivation of the equivalence of both algorithms, we also showcase the efficacy of our algorithm on a distributed heart disease data set and compare it with state-of-the-art methods.