02.01.2021
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18 Papers in 2021 Highlight Scientific Impact
We are happy to announce that MCML researchers are represented in 2021 with 18 papers in highly-ranked journals. Congrats to our researchers!
R. Sonabend • F. J. Király • A. Bender • B. Bischl • M. Lang
mlr3proba: An R Package for Machine Learning in Survival Analysis.
Bioinformatics 37.17. Sep. 2021. DOI
mlr3proba: An R Package for Machine Learning in Survival Analysis.
Bioinformatics 37.17. Sep. 2021. DOI
A. M. Keppler • K. Küßner • A.-L. Schulze • E. M. Suero • C. Neuerburg • M. Weigert • C. Braun • W. Böcker • C. Kammerlander • C. Zeckey
Radiographic cortical thickness parameters as predictors of rotational alignment in proximal tibial shaft fractures: a cadaveric study.
BMC Musculoskeletal Disorders 22.590. Jun. 2021. DOI
Radiographic cortical thickness parameters as predictors of rotational alignment in proximal tibial shaft fractures: a cadaveric study.
BMC Musculoskeletal Disorders 22.590. Jun. 2021. DOI
Y. Ji • M. Lotfollahi • F. A. Wolf • F. J. Theis
Machine learning for perturbational single-cell omics.
Cell Systems 12.6. Jun. 2021. DOI GitHub
Machine learning for perturbational single-cell omics.
Cell Systems 12.6. Jun. 2021. DOI GitHub
C. M. Verdun • T. Fuchs • P. Harar • D. Elbrächter • D. S. Fischer • J. Berner • P. Grohs • F. J. Theis • F. Krahmer
Group Testing for SARS-CoV-2 Allows for Up to 10-Fold Efficiency Increase Across Realistic Scenarios and Testing Strategies.
Frontiers in Public Health 9. Aug. 2021. DOI
Group Testing for SARS-CoV-2 Allows for Up to 10-Fold Efficiency Increase Across Realistic Scenarios and Testing Strategies.
Frontiers in Public Health 9. Aug. 2021. DOI
D. S. Fischer • L. Dony • M. König • A. Moeed • L. Zappia • L. Heumos • S. Tritschler • O. Holmberg • H. Aliee • F. J. Theis
Sfaira accelerates data and model reuse in single cell genomics.
Genome Biology 22.248. Aug. 2021. DOI
Sfaira accelerates data and model reuse in single cell genomics.
Genome Biology 22.248. Aug. 2021. DOI
I. Gerostathopoulos • F. Plášil • C. Prehofer • J. Thomas • B. Bischl
Automated Online Experiment-Driven Adaptation--Mechanics and Cost Aspects.
IEEE Access 9. Apr. 2021. DOI
Automated Online Experiment-Driven Adaptation--Mechanics and Cost Aspects.
IEEE Access 9. Apr. 2021. DOI
S. Klau • S. Hoffmann • C. J. Patel • J. P. A. Ioannidis • A.-L. Boulesteix
Examining the robustness of observational associations to model, measurement and sampling uncertainty with the vibration of effects framework.
International Journal of Epidemiology 50.1. Feb. 2021. DOI
Examining the robustness of observational associations to model, measurement and sampling uncertainty with the vibration of effects framework.
International Journal of Epidemiology 50.1. Feb. 2021. DOI
M. P. Fabritius • M. Seidensticker • J. Rueckel • C. Heinze • M. Pech • K. J. Paprottka • P. M. Paprottka • J. Topalis • A. Bender • J. Ricke • A. Mittermeier • M. Ingrisch
Bi-Centric Independent Validation of Outcome Prediction after Radioembolization of Primary and Secondary Liver Cancer.
Journal of Clinical Medicine 10.16. Aug. 2021. DOI
Bi-Centric Independent Validation of Outcome Prediction after Radioembolization of Primary and Secondary Liver Cancer.
Journal of Clinical Medicine 10.16. Aug. 2021. DOI
M. Binder • F. Pfisterer • M. Lang • L. Schneider • L. Kotthoff • B. Bischl
mlr3pipelines - Flexible Machine Learning Pipelines in R.
Journal of Machine Learning Research 22.184. Jun. 2021. URL
mlr3pipelines - Flexible Machine Learning Pipelines in R.
Journal of Machine Learning Research 22.184. Jun. 2021. URL
M. Ali • M. Berrendorf • C. T. Hoyt • L. Vermue • S. Sharifzadeh • V. Tresp • J. Lehmann
PyKEEN 1.0: A Python Library for Training and Evaluating Knowledge Graph Embeddings.
Journal of Machine Learning Research 22.82. Mar. 2021. PDF
PyKEEN 1.0: A Python Library for Training and Evaluating Knowledge Graph Embeddings.
Journal of Machine Learning Research 22.82. Mar. 2021. PDF
V. Bergen • R. A. Soldatov • P. V. Kharchenko • F. J. Theis
RNA velocity—current challenges and future perspectives.
Molecular Systems Biology 17.e10282. Aug. 2021. DOI
RNA velocity—current challenges and future perspectives.
Molecular Systems Biology 17.e10282. Aug. 2021. DOI
D. S. Fischer • M. Ansari • K. I. Wagner • S. Jarosch • Y. • C. H. Mayr • M. Lang • E. D’Ippolito • M. Hammel • L. Mateyka • S. Weber • L. S. Wolff • K. Witter • I. E. Fernandez • G. Leuschner • K. Milger • M. Frankenberger • L. Nowak • K. Heinig-Menhard • I. Koch • M. G. Stoleriu • A. Hilgendorff • J. Behr • A. Pichlmair • B. Schubert • F. J. Theis • D. H. Busch • H. B. Schiller • K. Schober
Single-cell RNA sequencing reveals ex vivo signatures of SARS-CoV-2-reactive T cells through ‘reverse phenotyping’.
Nature Communications 12.1. Jul. 2021. DOI
Single-cell RNA sequencing reveals ex vivo signatures of SARS-CoV-2-reactive T cells through ‘reverse phenotyping’.
Nature Communications 12.1. Jul. 2021. DOI
F. Meier • N. D. Köhler • A.-D. Brunner • J.-M. H. Wanka • E. Voytik • M. T. Strauss • F. J. Theis • M. Mann
Deep learning the collisional cross sections of the peptide universe from a million experimental values.
Nature Communications 12.1185. Feb. 2021. DOI
Deep learning the collisional cross sections of the peptide universe from a million experimental values.
Nature Communications 12.1185. Feb. 2021. DOI
K. T. Schmid • B. Höllbacher • C. Cruceanu • A. Böttcher • H. Lickert • E. B. Binder • F. J. Theis • M. Heinig
scPower accelerates and optimizes the design of multi-sample single cell transcriptomic studies.
Nature Communications 12.6625. Nov. 2021. DOI
scPower accelerates and optimizes the design of multi-sample single cell transcriptomic studies.
Nature Communications 12.6625. Nov. 2021. DOI
H. Seibold • S. Czerny • S. Decke • R. Dieterle • T. Eder • S. Fohr • N. Hahn • R. Hartmann • C. Heindl • P. Kopper • D. Lepke • V. Loidl • M. M. Mandl • S. Musiol • J. Peter • A. Piehler • E. Rojas • S. Schmid • H. Schmidt • M. Schmoll • L. Schneider • X.-Y. To • V. Tran • A. Völker • M. Wagner • J. Wagner • M. Waize • H. Wecker • R. Yang • S. Zellner • M. Nalenz
A computational reproducibility study of PLOS ONE articles featuring longitudinal data analyses.
PLOS One 16.6. Jun. 2021. DOI
A computational reproducibility study of PLOS ONE articles featuring longitudinal data analyses.
PLOS One 16.6. Jun. 2021. DOI
M. Bernhard • M. Schubert
Correcting Imprecise Object Locations for Training Object Detectors in Remote Sensing Applications.
Remote Sensing 13. Dec. 2021. URL
Correcting Imprecise Object Locations for Training Object Detectors in Remote Sensing Applications.
Remote Sensing 13. Dec. 2021. URL
A. Python • A. Bender • A. K. Nandi • P. A. Hancock • R. Arambepola • J. Brandsch • T. C. D. Lucas
Predicting non-state terrorism worldwide.
Science Advances 7.31. Jul. 2021. DOI
Predicting non-state terrorism worldwide.
Science Advances 7.31. Jul. 2021. DOI
J. P. Lopez • E. Brivio • A. Santambrogio • C. De Donno • A. Kos • M. Peters • N. Rost • D. Czamara • T. M. Brückl • S. Roeh • M. L. Pöhlmann • C. Engelhardt • A. Ressle • R. Stoffel • A. Tontsch • J. M. Villamizar • M. Reincke • A. Riester • S. Sbiera • M. Fassnacht • H. S. Mayberg • W. E. Craighead • B. W. Dunlop • C. B. Nemeroff • M. V. Schmidt • E. B. Binder • F. J. Theis • F. Beuschlein • C. L. Andoniadou • A. Chen
Single-cell molecular profiling of all three components of the HPA axis reveals adrenal ABCB1 as a regulator of stress adaptation.
Science Advances 7.5. Jan. 2021. DOI
Single-cell molecular profiling of all three components of the HPA axis reveals adrenal ABCB1 as a regulator of stress adaptation.
Science Advances 7.5. Jan. 2021. DOI
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