MCML Researchers With 18 Papers in Highly-Ranked Journals

We are happy to announce that MCML researchers are represented in 2021 with 18 papers in highly-ranked journals. Congrats to our researchers!

R. Sonabend • F. J. Király • A. Bender • B. Bischl • M. Lang
mlr3proba: An R Package for Machine Learning in Survival Analysis.
Bioinformatics 37.17. Sep. 2021. DOI

A. M. Keppler • K. Küßner • A.-L. Schulze • E. M. Suero • C. Neuerburg • M. Weigert • C. Braun • W. Böcker • C. Kammerlander • C. Zeckey
Radiographic cortical thickness parameters as predictors of rotational alignment in proximal tibial shaft fractures: a cadaveric study.
BMC Musculoskeletal Disorders 22.590. Jun. 2021. DOI

Y. Ji • M. Lotfollahi • F. A. Wolf • F. J. Theis
Machine learning for perturbational single-cell omics.
Cell Systems 12.6. Jun. 2021. DOI GitHub

C. M. Verdun • T. Fuchs • P. Harar • D. Elbrächter • D. S. Fischer • J. Berner • P. Grohs • F. J. Theis • F. Krahmer
Group Testing for SARS-CoV-2 Allows for Up to 10-Fold Efficiency Increase Across Realistic Scenarios and Testing Strategies.
Frontiers in Public Health 9. Aug. 2021. DOI

D. S. Fischer • L. Dony • M. König • A. Moeed • L. Zappia • L. Heumos • S. Tritschler • O. Holmberg • H. Aliee • F. J. Theis
Sfaira accelerates data and model reuse in single cell genomics.
Genome Biology 22.248. Aug. 2021. DOI

I. Gerostathopoulos • F. Plášil • C. Prehofer • J. Thomas • B. Bischl
Automated Online Experiment-Driven Adaptation--Mechanics and Cost Aspects.
IEEE Access 9. Apr. 2021. DOI

S. Klau • S. Hoffmann • C. J. Patel • J. P. A. Ioannidis • A.-L. Boulesteix
Examining the robustness of observational associations to model, measurement and sampling uncertainty with the vibration of effects framework.
International Journal of Epidemiology 50.1. Feb. 2021. DOI

M. P. Fabritius • M. Seidensticker • J. Rueckel • C. Heinze • M. Pech • K. J. Paprottka • P. M. Paprottka • J. Topalis • A. Bender • J. Ricke • A. Mittermeier • M. Ingrisch
Bi-Centric Independent Validation of Outcome Prediction after Radioembolization of Primary and Secondary Liver Cancer.
Journal of Clinical Medicine 10.16. Aug. 2021. DOI

M. Binder • F. Pfisterer • M. Lang • L. Schneider • L. Kotthoff • B. Bischl
mlr3pipelines - Flexible Machine Learning Pipelines in R.
Journal of Machine Learning Research 22.184. Jun. 2021. URL

M. Ali • M. Berrendorf • C. T. Hoyt • L. Vermue • S. Sharifzadeh • V. Tresp • J. Lehmann
PyKEEN 1.0: A Python Library for Training and Evaluating Knowledge Graph Embeddings.
Journal of Machine Learning Research 22.82. Mar. 2021. PDF

V. Bergen • R. A. Soldatov • P. V. Kharchenko • F. J. Theis
RNA velocity—current challenges and future perspectives.
Molecular Systems Biology 17.e10282. Aug. 2021. DOI

D. S. Fischer • M. Ansari • K. I. Wagner • S. Jarosch • Y. • C. H. Mayr • M. Lang • E. D’Ippolito • M. Hammel • L. Mateyka • S. Weber • L. S. Wolff • K. Witter • I. E. Fernandez • G. Leuschner • K. Milger • M. Frankenberger • L. Nowak • K. Heinig-Menhard • I. Koch • M. G. Stoleriu • A. Hilgendorff • J. Behr • A. Pichlmair • B. Schubert • F. J. Theis • D. H. Busch • H. B. Schiller • K. Schober
Single-cell RNA sequencing reveals ex vivo signatures of SARS-CoV-2-reactive T cells through ‘reverse phenotyping’.
Nature Communications 12.1. Jul. 2021. DOI

F. Meier • N. D. Köhler • A.-D. Brunner • J.-M. H. Wanka • E. Voytik • M. T. Strauss • F. J. Theis • M. Mann
Deep learning the collisional cross sections of the peptide universe from a million experimental values.
Nature Communications 12.1185. Feb. 2021. DOI

K. T. Schmid • B. Höllbacher • C. Cruceanu • A. Böttcher • H. Lickert • E. B. Binder • F. J. Theis • M. Heinig
scPower accelerates and optimizes the design of multi-sample single cell transcriptomic studies.
Nature Communications 12.6625. Nov. 2021. DOI

H. Seibold • S. Czerny • S. Decke • R. Dieterle • T. Eder • S. Fohr • N. Hahn • R. Hartmann • C. Heindl • P. Kopper • D. Lepke • V. Loidl • M. M. Mandl • S. Musiol • J. Peter • A. Piehler • E. Rojas • S. Schmid • H. Schmidt • M. Schmoll • L. Schneider • X.-Y. To • V. Tran • A. Völker • M. Wagner • J. Wagner • M. Waize • H. Wecker • R. Yang • S. Zellner • M. Nalenz
A computational reproducibility study of PLOS ONE articles featuring longitudinal data analyses.
PLOS One 16.6. Jun. 2021. DOI

M. Bernhard • M. Schubert
Correcting Imprecise Object Locations for Training Object Detectors in Remote Sensing Applications.
Remote Sensing 13. Dec. 2021. URL

A. Python • A. Bender • A. K. Nandi • P. A. Hancock • R. Arambepola • J. Brandsch • T. C. D. Lucas
Predicting non-state terrorism worldwide.
Science Advances 7.31. Jul. 2021. DOI

J. P. Lopez • E. Brivio • A. Santambrogio • C. De Donno • A. Kos • M. Peters • N. Rost • D. Czamara • T. M. Brückl • S. Roeh • M. L. Pöhlmann • C. Engelhardt • A. Ressle • R. Stoffel • A. Tontsch • J. M. Villamizar • M. Reincke • A. Riester • S. Sbiera • M. Fassnacht • H. S. Mayberg • W. E. Craighead • B. W. Dunlop • C. B. Nemeroff • M. V. Schmidt • E. B. Binder • F. J. Theis • F. Beuschlein • C. L. Andoniadou • A. Chen
Single-cell molecular profiling of all three components of the HPA axis reveals adrenal ABCB1 as a regulator of stress adaptation.
Science Advances 7.5. Jan. 2021. DOI