Probing Cell Identity Hierarchies by Fate Titration and Collision During Direct Reprogramming
Molecular Systems Biology 18.e11129. Sep. 2022
#p_theis
SFN+22
Association of Bronchial Steroid Inducible Methylation Quantitative Trait Loci With Asthma and Chronic Obstructive Pulmonary Disease Treatment Response
Clinical and Translational Allergy 12.8. Aug. 2022
#p_theis
LNL+22
Mapping Single-Cell Data to Reference Atlases by Transfer Learning
Nature Biotechnology 40. Aug. 2022
#p_theis
HBK+22a
Predicting Single-Cell Perturbation Responses for Unseen Drugs
MLDD @ICML 2022
#p_guennemann#p_kilbertus#p_theis
BFK+22
Alveolar Macrophages in Early Stage COPD Show Functional Deviations With Properties of Impaired Immune Activation
Frontiers in Immunology 13. Jul. 2022
#p_theis
PSK+22
Squidpy: A Scalable Framework for Spatial Omics Analysis
Nature Methods 19. Jan. 2022
#p_theis
LBK+22
CellRank for Directed Single-Cell Fate Mapping
Nature Methods 19.2. Jan. 2022
#p_theis
HFG+21
Graph Representation Learning for Single-Cell Biology
Current Opinion in Systems Biology 28.100347. Dec. 2021
#p_guennemann#p_theis
SHC+21
ScPower Accelerates and Optimizes the Design of Multi-Sample Single Cell Transcriptomic Studies
Nature Communications 12.6625. Nov. 2021
#p_theis
VFH+21
Group Testing for SARS-CoV-2 Allows for Up to 10-Fold Efficiency Increase Across Realistic Scenarios and Testing Strategies
Frontiers in Public Health 9. Aug. 2021
#p_krahmer#p_theis
FDK+21
Sfaira Accelerates Data and Model Reuse in Single Cell Genomics
Genome Biology 22.248. Aug. 2021
#p_theis
BSK+21
RNA Velocity—current Challenges and Future Perspectives
Molecular Systems Biology 17.e10282. Aug. 2021
#p_theis
FAW+21
Single-Cell RNA Sequencing Reveals Ex Vivo Signatures of SARS-CoV-2-Reactive T Cells Through ‘Reverse Phenotyping’
Nature Communications 12.1. Jul. 2021
#p_theis
JLW+21
Machine Learning for Perturbational Single-Cell Omics
Cell Systems 12.6. Jun. 2021
#p_theis
FST21
Learning Cell Communication From Spatial Graphs of Cells
Preprint (Jun. 2021)
#p_theis
LSD+21
Compositional Perturbation Autoencoder for Single-Cell Response Modeling
Preprint (May. 2021)
#p_theis
PSK+21
Squidpy: A Scalable Framework for Spatial Single Cell Analysis
Preprint (Apr. 2021)
#p_theis
MKB+21
Deep Learning the Collisional Cross Sections of the Peptide Universe From a Million Experimental Values
Nature Communications 12.1185. Feb. 2021
#p_theis
LBS+21a
Single-Cell Molecular Profiling of All Three Components of the HPA Axis Reveals Adrenal ABCB1 as a Regulator of Stress Adaptation
Science Advances 7.5. Jan. 2021
#p_theis
LNT+20
Conditional Out-of-Distribution Generation for Unpaired Data Using Transfer VAE
Bioinformatics 36.Supplement 2. Dec. 2020
#p_theis
CKF+20
A Sparse Deep Learning Approach for Automatic Segmentation of Human Vasculature in Multispectral Optoacoustic Tomography
Photoacoustics 20.100203. Dec. 2020
#p_theis
CRB+20
Predicting Single-Cell Gene Expression Profiles of Imaging Flow Cytometry Data With Machine Learning
Nucleic Acids Research 48.20. Nov. 2020
#p_theis
FWS+20
Predicting Antigen Specificity of Single T Cells Based on TCR CDR3 Regions
Molecular Systems Biology 16.8. Aug. 2020
#p_theis
BLP+20
Generalizing RNA Velocity to Transient Cell States Through Dynamical Modeling
Nature Biotechnology 38. Aug. 2020
#p_theis
KCR+20
In Vivo Identification of Apoptotic and Extracellular Vesicle-Bound Live Cells Using Image-Based Deep Learning
Journal of Extracellular Vesicles 9.1. Jul. 2020
#p_theis
LNL+20
Query to Reference Single-Cell Integration With Transfer Learning
Preprint (Jul. 2020)
#p_theis
BFK+20
Alterations of Multiple Alveolar Macrophage States in Chronic Obstructive Pulmonary Disease
Preprint (May. 2020)
#p_theis
SBT+20
Targeted Pharmacological Therapy Restores Β-Cell Function for Diabetes Remission
Nature Metabolism 2. Feb. 2020
#p_theis
LWT19
ScGen Predicts Single-Cell Perturbation Responses
Nature Methods 16.8. Jul. 2019
#p_theis
EBK+19
ScSLAM-Seq Reveals Core Features of Transcription Dynamics in Single Cells
Nature 571. Jul. 2019
#p_theis
LT19
Current Best Practices in Single‐cell RNA‐seq Analysis: A Tutorial