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#p_gagneur

SKH+25a

Nucleotide Dependency Analysis of Genomic Language Models Detects Functional Elements

Nature Genetics 57. Oct. 2025

#p_gagneur

HMK+25

Scooby: Modeling Multi-Modal Genomic Profiles From DNA Sequence at Single-Cell Resolution

Nature Methods. Oct. 2025

#p_gagneur

HKG25

Flashzoi: An Enhanced Borzoi for Accelerated Genomic Analysis

Bioinformatics 41.19. Sep. 2025

#p_gagneur

DML+25

Altered Translation Elongation Contributes to Key Hallmarks of Aging in the Killifish Brain

Science 389.6759. Jul. 2025

#p_gagneur

TKH+25

Nucleotide Dependency Analysis of DNA Language Models Reveals Genomic Functional Elements

CSHL 2025

#p_gagneur

HKG+24a

Flashzoi: An Enhanced Borzoi Model for Accelerated Genomic Analysis

Preprint (Dec. 2024)

#p_gagneur

CHO+24

Integration of Variant Annotations Using Deep Set Networks Boosts Rare Variant Association Testing

Nature Genetics 56. Sep. 2024

#p_gagneur

DML+24

Impaired Biogenesis of Basic Proteins Impacts Multiple Hallmarks of the Aging Brain

Preprint (Jan. 2024)

#p_gagneur

BBL+23a

Evaluation of Input Data Modality Choices on Functional Gene Embeddings

NAR Genomics and Bioinformatics 5.4. Dec. 2023

#p_gagneur

KHG+24

Species-Aware DNA Language Models Capture Regulatory Elements and Their Evolution

Genome Biology 35.83. Apr. 2023

#p_gagneur

SZT+23

Cellular Energy Regulates MRNA Translation and Degradation in a Codon-Specific Manner

Preprint (Apr. 2023)

#p_gagneur
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